SNP Profiles of ICS 8 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
1._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
2._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
3._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
4._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
5._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
6._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
7._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
8._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
9._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
10._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
11._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
12._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
13._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
14._GC-08-054-1-65	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
15._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
16._ICS_8	TT	AA	GG	CC	TT	AA	CC	TT	TT	TT	AA	AA	GG	CT
17._GC-05-53-2-4	AA	AA	CC	GG	AA	AA	GG	AA	_	_	AA	AA	GG	AG
18._GC-05-53-2-4	AG	AA	CC	GG	AA	AC	AG	AC	_	_	AA	AG	AG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
1._GC-08-054-1-65	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
2._GC-08-054-1-65	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
3._GC-08-054-1-65	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
4._GC-08-054-1-65	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
5._GC-08-054-1-65	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
6._GC-08-054-1-65	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
7._GC-08-054-1-65	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
8._ICS_8	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
9._ICS_8	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
10._ICS_8	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
11._ICS_8	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
12._ICS_8	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
13._ICS_8	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
14._GC-08-054-1-65	AA	GG	TT	_	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
15._ICS_8	AA	GG	TT	_	GG	GG	GG	TT	CC	CC	TT	TT	CC	AA
16._ICS_8	AA	GG	TT	CC	GG	GG	GG	TT	CC	CC	TT	TT	AC	AA
17._GC-05-53-2-4	AA	GG	AA	GG	CC	CC	_	AA	CC	CC	AA	_	CC	_
18._GC-05-53-2-4	AA	GG	AA	GG	CG	CC	_	AA	AC	CG	AA	_	CC	_

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
1._GC-08-054-1-65	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
2._GC-08-054-1-65	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
3._GC-08-054-1-65	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
4._GC-08-054-1-65	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
5._GC-08-054-1-65	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
6._GC-08-054-1-65	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
7._GC-08-054-1-65	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
8._ICS_8	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
9._ICS_8	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
10._ICS_8	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
11._ICS_8	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
12._ICS_8	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
13._ICS_8	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
14._GC-08-054-1-65	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
15._ICS_8	GG	AA	CC	AG	CC	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
16._ICS_8	AG	AA	CC	AG	_	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
17._GC-05-53-2-4	GG	AA	GG	AG	GG	AC	AG	AC	AC	TT	GG	X_X	X_X	X_X
18._GC-05-53-2-4	GG	AA	GG	AA	GG	AA	AG	AC	CC	AT	GG	X_X	X_X	X_X

Input profile: ICS_8

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Mars Center for Cocoa Science, Brazil

Location: 8165 1 > FP

Dapeng Zhang, 2016

1._ICS_8 GC-08-054-1-65

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

2._ICS_8 GC-08-054-1-65

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

3._ICS_8 GC-08-054-1-65

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

4._ICS_8 GC-08-054-1-65

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

5._ICS_8 GC-08-054-1-65

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

6._ICS_8 GC-08-054-1-65

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

7._ICS_8 GC-08-054-1-65

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

8._ICS_8

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 3 > FP

Dapeng Zhang, 2016

9._ICS_8

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 6

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._ICS_8

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 7

Dapeng Zhang, 2016

11._ICS_8

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 8

Dapeng Zhang, 2016

12._ICS_8

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 9

Dapeng Zhang, 2016

13._ICS_8

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 2 > FP

Dapeng Zhang, 2016

14._ICS_8 GC-08-054-1-65

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

15._ICS_8

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8165 10

Dapeng Zhang, 2016

16._ICS_8

97.4 %
38 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block5

Dapeng Zhang, 2016

17._ICS_8 GC-05-53-2-4

50 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: GC05, Block: 2, Rep: 4, Tree: 1

Notes: MCCS_Selection_parents

18._ICS_8 GC-05-53-2-4

38.2 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: GC05, Block: 2, Rep: 4, Tree: 4

Notes: MCCS_Selection_parents

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25